Search results for "interaction [neutrino nucleon]"

Monte Carlo studies of polymer interdiffusion and spinodal decomposition: A review

1991

Abstract Putting a layer of polymer A on top of a layer of polymer B, the broadening of the interfacial profile is observed in the framework of a lattice model (‘bond fluctuation method’). The interdiffusion constant is studied as a function of chain length, vacancy concentration, and interaction energy between unlike monomers, and a comparison with pertinent theoretical predictions is made. A lattice model where polymers are represented as self-avoiding walks on a simple cubic lattice is used to model ‘spinodal decomposition’, i.e. phase separation by ‘uphill diffusion’ in the unstable part of the phase diagram of a polymer mixture. For chain lengths N ≤ 32, the linearized Cahn-like theory…

Algorithms and tools for protein-protein interaction networks clustering, with a special focus on population-based stochastic methods

2014

Abstract Motivation: Protein–protein interaction (PPI) networks are powerful models to represent the pairwise protein interactions of the organisms. Clustering PPI networks can be useful for isolating groups of interacting proteins that participate in the same biological processes or that perform together specific biological functions. Evolutionary orthologies can be inferred this way, as well as functions and properties of yet uncharacterized proteins. Results: We present an overview of the main state-of-the-art clustering methods that have been applied to PPI networks over the past decade. We distinguish five specific categories of approaches, describe and compare their main features and …

Newton algorithm for Hamiltonian characterization in quantum control

2014

We propose a Newton algorithm to characterize the Hamiltonian of a quantum system interacting with a given laser field. The algorithm is based on the assumption that the evolution operator of the system is perfectly known at a fixed time. The computational scheme uses the Crank-Nicholson approximation to explicitly determine the derivatives of the propagator with respect to the Hamiltonians of the system. In order to globalize this algorithm, we use a continuation method that improves its convergence properties. This technique is applied to a two-level quantum system and to a molecular one with a double-well potential. The numerical tests show that accurate estimates of the unknown paramete…

Electrochemical behavior of layered annulenes

1985

Abstract The cyclic voltammetric behavior of a series of dimeric [14] annulenes was examined and compared with the monomer. The data suggest a signigficant degree of interaction between the annulene rings when a three-carbon chain connects them, little or no interaction with an eight-carbon chain, and weak interaction with a four-carbon chain.

Complex Detection in Protein-Protein Interaction Networks: A Compact Overview for Researchers and Practitioners

2012

The availability of large volumes of protein-protein interaction data has allowed the study of biological networks to unveil the complex structure and organization in the cell. It has been recognized by biologists that proteins interacting with each other often participate in the same biological processes, and that protein modules may be often associated with specific biological functions. Thus the detection of protein complexes is an important research problem in systems biology. In this review, recent graph-based approaches to clustering protein interaction networks are described and classified with respect to common peculiarities. The goal is that of providing a useful guide and referenc…

Electrostatic interaction of a solute with a continuum. Improved description of the cavity and of the surface cavity bound charge distribution.

1987

Algorithms for a finer description of cavities in continuous media and for a more efficient selection of sampling points on the cavity surface are described. Applications to the evaluation of solute surface and volume and to the calculation of the solute-solvent electrostatic interaction energy, as well as of the cavitation energy are shown as examples.

Modular organization in the reductive evolution of protein-protein interaction networks

2006

Analysis of the reduction in genome size of Buchnera aphidicola from its common ancestor E. coli shows that the organization of networks into modules is the property that seems to be directly related with the evolutionary process of genome reduction.

Climate variability and change : hydrological impacts

2006

Fast simulation of muons produced at the SHiP experiment using Generative Adversarial Networks

2019

This paper presents a fast approach to simulating muons produced in interactions of the SPS proton beams with the target of the SHiP experiment. The SHiP experiment will be able to search for new long-lived particles produced in a 400~GeV$/c$ SPS proton beam dump and which travel distances between fifty metres and tens of kilometers. The SHiP detector needs to operate under ultra-low background conditions and requires large simulated samples of muon induced background processes. Through the use of Generative Adversarial Networks it is possible to emulate the simulation of the interaction of 400~GeV$/c$ proton beams with the SHiP target, an otherwise computationally intensive process. For th…

Multivariate optimization of the hollow fibre liquid phase microextraction of muscimol in human urine samples.

2016

Abstract A liquid phase microextraction based on hollow fibre followed by liquid chromatographic determination was developed for the extraction and quantitation of the hallucinogenic muscimol from urine samples. Method applicability on polar hallucinogens was also tested on two alkaloids, a psychedelic hallucinogen, tryptamine and a polar amino acid, tryptophan which exists in its charged state in the entire pH range. A multivariate design of experiments was used in which a half fractional factorial approach was applied to screen six factors (donor phase pH, acceptor phase HCl concentration, carrier composition, stirring rate, extraction time and salt content) for their extent of vitality i…